Flynn, P. J. and Moreau, C.S. (2024), Viral diversity and co-evolutionary dynamics across the ant phylogeny. Molecular Ecology. https://onlinelibrary.wiley.com/doi/10.1111/mec.17519

Flynn, P. J. , D’Amelio, C., Russell, J.A., and Moreau, C.S. (2021), Localization of bacterial communities in gut compartments across Cephalotes turtle ants. Applied and Environmental Microbiology, doi:10.1128/AEM.02803-20

Flynn, P. J. and Moreau, C.S. (2019), Assessing the diversity of endogenous viruses throughout ant genomes. Frontiers in Microbiology, doi:10.3389/fmicb.2019.01139

Dennis, P.W.*, Flynn, P. J.*, de Souza, W.M., Singer, J.B., Moreau, C.S., Wilson, S.J. and Gifford, R.J. (2018), Insights into circovirus host range from the genomic fossil record. Journal of Virology, doi:10.1128/JVI.00145-18 *authors contributed equally

Queenan A.M., Dowling D.J., Cheng, W.K., Fae, K., Fernandez J., Flynn, P.J., Joshi S., Brightman, S.E., Ramirez J., Serroyen, J., Wiertsema S., Fort- anier, A.,van den Dobbelsteen, G., Levy, O. , and Poolman, J. (2018). Increas- ing FIM2/3 antigen-content improves efficacy of Bordetella pertussis vaccines in mice in vivo without altering vaccine-induced human reactogenicity biomarkers in vitro. Vaccine, doi:10.1016/j.vaccine.2018.11.028

Sanchez-Schmitz, G., Stevens, C.R., Bettencourt, I.A., Flynn, P.J., Schmitz- Abe, K., Metser G., Hamm D., Jensen, K.J., Benn, C., and Levy, O.(2018). Microphysiologic human tissue constructs reproduce autologous age-specific BCG and HBV primary immunization in vitro. Frontiers in Immunology, doi:10.3389/fimmu.2018.02634

Flynn, P. J. (2017), Digest: Using transcriptomics to map parental care be- havior in burying beetles. Evolution, 71: 21322133. doi:10.1111/evo.13301

Pearcy, A, Gibson, M, Balmagia, J, Berkey, J, Flynn, P, and Viljoen, S. (2013). Disturbance effects on a South African river and the impact on the Mutale River Crocodylus niloticus population. Proceedings of the 22nd Working Meeting of the IUCN-SSC Crocodile Specialist Group. IUCN: Gland, Switzerland.

Flynn, P. J. (2012). ”Zaglossus bartoni” (On-line), Animal Diversity Web.